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Piseapplication freeware
 

Piseapplication

Added: October 24, 2010 | Visits: 1.030

Bio::Tools::Run::PiseApplication::fasta Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db... Platforms: *nix

License: Freeware Size: 82.94 KB Download (79): Bio::Tools::Run::PiseApplication::fasta Download

Added: August 02, 2010 | Visits: 1.253

Bio::Tools::Run::PiseApplication::align2model Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe:... Platforms: *nix

License: Freeware Size: 829.44 KB Download (75): Bio::Tools::Run::PiseApplication::align2model Download

Added: January 07, 2010 | Visits: 1.282

Bio::Tools::Run::PiseApplication::consensus Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein... Platforms: *nix

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Added: October 23, 2010 | Visits: 1.647

Bio::Tools::Run::PiseApplication::charge Bio::Tools::Run::PiseApplication::charge is a Perl module. Bio::Tools::Run::PiseApplication::charge Bioperl class for: CHARGE Protein charge plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/charge.html for available values): charge (String) init... Platforms: *nix

License: Freeware Size: 829.44 KB Download (72): Bio::Tools::Run::PiseApplication::charge Download

Added: November 23, 2010 | Visits: 869

Bio::Tools::Run::PiseApplication::freak Bio::Tools::Run::PiseApplication::freak is a Perl module. Bio::Tools::Run::PiseApplication::freak Bioperl class for: FREAK Residue/base frequency table or plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/freak.html for available values): freak... Platforms: *nix

License: Freeware Size: 829.44 KB Download (70): Bio::Tools::Run::PiseApplication::freak Download

Added: March 15, 2010 | Visits: 1.145

Bio::Tools::Run::PiseWorkflow Bio::Tools::Run::PiseWorkflow is a class to create a Pise workflow using Pise application objects as methods. A workflow is defined by a set of methods which all instanciate the class PiseApplication. SYNOPSIS # First, create a Bio::Tools::Run::AnalysisFactory::Pise object: my $factory = new... Platforms: *nix

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